PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016456660.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ZF-HD
Protein Properties Length: 226aa    MW: 25699.7 Da    PI: 6.901
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016456660.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.56.8e-3352106560
     ZF-HD_dimer   5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                     rY+eClkNhA+ +Gg+avDGCgEf+ps geegt +alkCaAC+CHRnFHR+eve e
  XP_016456660.1  52 RYRECLKNHAVGIGGQAVDGCGEFLPS-GEEGTLDALKCAACNCHRNFHRKEVEGE 106
                     8*************************9.999*********************9865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-2235104IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047708.5E-3052103IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.7E-3052103IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.2653102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466896.57E-18154224IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-29155225IPR009057Homeodomain-like
TIGRFAMsTIGR015651.7E-22163220IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MEFDEEHEDQ EEEIANIPQI PTTENNYQEL GEGGPISQAA ATLRKNNVPI PRYRECLKNH  60
AVGIGGQAVD GCGEFLPSGE EGTLDALKCA ACNCHRNFHR KEVEGEILNF HHPTPPPPIL  120
HHPPHHYPYR YHQRPLALPS ISSREDIEEY VSNPSSSGGS GSRKRFRTKF TQDQKEKMFA  180
FAEGLGWRIQ KENEAAVQQF CAETNIRRQV FKVWMRNNKN TLGKKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-251642211875ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016456660.11e-170PREDICTED: zinc-finger homeodomain protein 2-like
SwissprotQ9SB612e-70ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBLF6H1064e-77F6H106_VITVI; Putative uncharacterized protein
TrEMBLA5BZD72e-76A5BZD7_VITVI; Putative uncharacterized protein
STRINGVIT_18s0001g07140.t011e-76(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51824128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-62homeobox protein 22